MAC VS WINDOWS FOR GENOME DATA ANALYSIS KEYGEN
re-Searcher solves this problem by pre-processing VCF files by chunks to not load RAM of computer. ResultsĮxisting tools for processing VCF files don’t usually have an intuitive graphical interface, but instead have just a command-line interface that may be challenging to use for the broader biomedical community interested in genomics data analysis. Variant Call Format (VCF) is the most widespread genomics file type and standard format containing genomic information and variants of sequenced samples. Different standard data types and file formats have been developed to store and analyze sequence and genomics data. Modern and user-friendly bioinformatics tools for analysis and interpretation of genomics data becomes essential during the analysis of sequencing data. High-throughput sequencing platforms generate a massive amount of high-dimensional genomic datasets that are available for analysis. re-Searcher: GUI-based bioinformatics tool for simplified genomics data mining of VCF files. Cite this article Karabayev D, Molkenov A, Yerulanuly K, Kabimoldayev I, Daniyarov A, Sharip A, Seisenova A, Zhumadilov Z, Kairov U. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. Licence This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits using, remixing, and building upon the work non-commercially, as long as it is properly attributed. 3 School of Medicine, Nazarbayev University, Nur-Sultan, Kazakhstan DOI 10.7717/peerj.11333 Published Accepted Received Academic Editor Hossein Khiabanian Subject Areas Bioinformatics, Genetics, Genomics, Molecular Biology, Medical Genetics Keywords Genome analysis, Genomics, Bioinformatics, Genomics data mining, NGS data analysis, Variant call format, VCF Copyright © 2021 Karabayev et al.
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